AGENTS.md

Use README.md for shared repository guidance such as hosting, local development, workflow, repo layout, and content file locations. This file focuses on agent-specific content, sourcing, and editing rules.

When writing repo documentation, always use paths relative to the repository root such as README.md, docs/publications.md, or _publications/preprint-2025-11-19-sc4D.md. Do not include absolute filesystem paths such as /Users/....

Use docs/content-guidelines.md for shared content standards, trusted sources, naming conventions, writing guidance, and the editing checklist.

When editing publication pages, follow the publication type and filename conventions in docs/publications.md. In particular, use the preprint- filename prefix for preprint pages and a bare <yyyy-mm-dd>- prefix for peer-reviewed articles, and follow the rename-and-redirect workflow when a preprint becomes a peer-reviewed paper.